Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792085.1_cds_XP_016510410.1_2252
CDS Infomation

[gene=LOC107827730] [db_xref=GeneID:107827730] [protein=pto-interacting protein 1-like] [protein_id=XP_016510410.1] [location=complement(join(52565..52906,53769..53916,54027..54106,54199..54371,54448..54705,54799..55360))] [gbkey=CDS]
Sequence

ATGGGGTTTCTTCAAAATAGTTGTACTAACTCTGCGGAGCCTTTTTACAGCTCAAAGACT
CAACCTTTAGCCAGTACTGATACTGATAACAACTATAGTGTGTATGATGAGTTAAAAATC
AAATCCTTAATTTACAGAATGATTTGGGATTTTGGGTTGGCCTGTTTTATTCCGACTTGC
CGGCGGCGAACTTCCGGCAAGGATAACGGTGATAAGGATAAAGGTAGTGTTAGCAGCAGT
TTGGAGCATAATAAAGCTTGGTTACTTGCTGAAACAGGAGCTTGTGGTACTGAATTAATT
AATGCTGAGCCACATTCACTTCACTCCTCTTTTAGGTTCAGCTTTTGTTCTCAGGTTGAG
CTTGAGTCTATGAATATGAATAGATGTTCCTCTGCTACTGTTTTGATGGTGAATTTGGAT
AATGGGTTGACTGATCCACTTTCCAGAGAGCTAAAATGGAGGAAAATTCAATCACTTGAG
AGGAGTATTTCTCCTGTGACTCGTTCTTTAATTAGGTTCACCTATGCTGAGATTGCTTCT
GCTACTCGCTATTTTTCTAAAGGTAGAGTTTTGGGAAGAGGAGCATTGAGCTATGTTTTT
AGAGGAAGATTGGGATTTATGAGGACAAGTGTTGCTATAAAGAGGTTAGATAGGGAAGAT
AAGGAATCTCCAAAGGCATTCTGTAGGGAATTGATGATTGCTAGTTCTCTTCATAACCCA
TACATTGTTCCTTTGGTTGGTTTTTGCATTGATCCAGAGGAGGGTTTCTTTTTGGTCTAC
AAGTATGTATCTGGTGGAAGTTTAGAACGGTATTTACATGAGAAGAAGAGGGGAGTGAAA
GGCGGTCCAGCACTTCCATGGTCTACGCGGTATAAGGTGGCCGTAGGCATAGCAGAGTCA
ATAGGGTATTTGCATTATGGAACTGAGAGGTGTGTTGTTCATAGGGACATTAAGCCCTCC
AACATTCTTCTTTCATCCAAGAAAATACCCAAGTTGTGTGACTTTGGCTTAGCTACATGG
ACTCCTTCACCTTCTGTACCTTTCCTTTGTAGAACAGTTAAAGGAACATTCGGGTATTTA
GCTCCTGAATATTTTCAGCACGGTAAAATATCAGATAAAACTGATGTTTATGCCTTTGGA
GTTGTCCTCCTGGAGCTGCTAACCGGAAGGAAGCCAATTGAAGCGAAAAGGGGACCAGGA
GAAGAAAACTTGGTGTTGTGGGCAAAGCCTCTAATGCAGCAAGGAGCTCTTGAAAAGTTT
CTTGATCCAAGACTCAAATTCCCTCAAAAGAATCTACAACAAATAGCTCGGATGACCCAA
GCAGCAGCTGCATGCATACACAGTGAAGAGTCTCGAAGGTCCAATATGGACGAGATCTTT
GCCATATTGAGAGGCACAGAACCTCGTTCCACGTTCAGAAAGAAGTCTATTTCACGCAGT
AATAGTTGTATGATTGAGTGTTATCCCCAATTGCAGCGGACAAAAAGTGAAATGAAGAGT
CACTTGGCCTTGGCAATGTTAGGAGTTCCTGACTTCGAGGATGATGATTTTTATTGTCGT
TGA

Peptide Sequence

PEP ID

XP_016510410.1
PEP Infomation

PREDICTED: pto-interacting protein 1-like [Nicotiana tabacum]
Sequence

MGFLQNSCTNSAEPFYSSKTQPLASTDTDNNYSVYDELKIKSLIYRMIWDFGLACFIPTC
RRRTSGKDNGDKDKGSVSSSLEHNKAWLLAETGACGTELINAEPHSLHSSFRFSFCSQVE
LESMNMNRCSSATVLMVNLDNGLTDPLSRELKWRKIQSLERSISPVTRSLIRFTYAEIAS
ATRYFSKGRVLGRGALSYVFRGRLGFMRTSVAIKRLDREDKESPKAFCRELMIASSLHNP
YIVPLVGFCIDPEEGFFLVYKYVSGGSLERYLHEKKRGVKGGPALPWSTRYKVAVGIAES
IGYLHYGTERCVVHRDIKPSNILLSSKKIPKLCDFGLATWTPSPSVPFLCRTVKGTFGYL
APEYFQHGKISDKTDVYAFGVVLLELLTGRKPIEAKRGPGEENLVLWAKPLMQQGALEKF
LDPRLKFPQKNLQQIARMTQAAAACIHSEESRRSNMDEIFAILRGTEPRSTFRKKSISRS
NSCMIECYPQLQRTKSEMKSHLALAMLGVPDFEDDDFYCR

Transcript Sequence

Gene sequence data has not been registered.